Lectures

Analysis of RNA II: RiboSeq, and other things
Mar 30, 2020
SARS-COV-2 COVID-19 RNAseq

Analysis of RNA I: Molecular Biology of SARS-COV-2
Mar 17, 2020
SARS-COV-2 COVID-19 RNAseq

NumPy
Mar 2, 2020
python numpy

Calling variants I
Feb 24, 2020
galaxy covid-19 sequence variants

Assembling reads into genomes
Feb 17, 2020
assembly DeBruijn

Sequence alignment I
Feb 9, 2020
alignment dynamic programming

Mapping Reads II
Feb 5, 2020
mapping SAM/BAM

Mapping Reads I
Feb 3, 2020
mapping suffix tree BWT

Defining project and getting data
Jan 28, 2020
python conda bioconda sra duplex sequencing HIV

What is the nature of sequencing data?
Jan 27, 2020
sequencing sanger illumina pacbio oxford nanopore

Basic machinery = Jupyter + Python
Jan 15, 2020
jupyter github python