Calling variants I


galaxy covid-19 sequence variants

We will call variants in three COVID-19 isolates using several variant calling tools.

  1. Go to Galaxy workshop site
  2. Create an account
  3. Import history from here

This is the list of fields we will be extracting:

CHROM POS REF ALT DP AF SB DP4 EFF[*].IMPACT EFF[*].FUNCLASS EFF[*].EFFECT EFF[*].GENE EFF[*].CODON