Calling variants I
galaxy covid-19 sequence variants
We will call variants in three COVID-19 isolates using several variant calling tools.
- Go to Galaxy workshop site
- Create an account
- Import history from here
This is the list of fields we will be extracting:
CHROM POS REF ALT DP AF SB DP4 EFF[*].IMPACT EFF[*].FUNCLASS EFF[*].EFFECT EFF[*].GENE EFF[*].CODON